Package: HaDeX2
Title: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass
        Spectrometry Data
Version: 1.0.0
Authors@R: c(person("Weronika", "Puchala", 
           email = "puchala.weronika@gmail.com", 
           comment = c(ORCID = "0000-0003-2163-1429"),
           role = c("cre", "aut")),
           person("Michal", "Burdukiewicz", 
           email = "michalburdukiewicz@gmail.com", 
           comment = c(ORCID = "0000-0001-8926-582X"),
           role = c("aut")),
           person("Dominik", "Rafacz", 
           email = "dominikrafacz@gmail.com",
           role = c("ctb")),
           person("Krystyna", "Grzesiak", 
           email = "krygrz11@gmail.com",
           role = c("ctb")))
Description: Processing, analysis and visualization of Hydrogen
        Deuterium eXchange monitored by Mass Spectrometry experiments
        (HDX-MS). 'HaDeX2' introduces a new standardized and
        reproducible workflow for the analysis of the HDX-MS data,
        including uncertainty propagation, data aggregation and
        visualization on 3D structure. Additionally, it covers data
        exploration, quality control and generation of
        publication-quality figures. All functionalities are also
        available in the accompanying 'shiny' app.
Depends: R (>= 3.5)
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
Imports: checkmate, data.table, dplyr, ggplot2, glue, gridExtra,
        magick, purrr, readr, readxl, r3dmol (>= 0.1.2), remotes,
        stringi, tidyr, ggiraph
Suggests: bookdown, digest, knitr, magrittr, pander, renv, rmarkdown,
        microbenchmark, testthat, vdiffr, scales, shiny, spelling
VignetteBuilder: knitr
Language: en-US
URL: https://hadexversum.github.io/HaDeX2/
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev git make libmagick++-dev gsfonts libicu-dev
        libpng-dev libuv1-dev libssl-dev libx11-dev
Repository: https://hadexversum.r-universe.dev
Date/Publication: 2026-02-08 23:27:21 UTC
RemoteUrl: https://github.com/hadexversum/hadex2
RemoteRef: HEAD
RemoteSha: 41769f60887545bb3f7861341970f8f02efa320e
NeedsCompilation: no
Packaged: 2026-06-10 09:35:51 UTC; root
Author: Weronika Puchala [cre, aut] (ORCID:
    <https://orcid.org/0000-0003-2163-1429>),
  Michal Burdukiewicz [aut] (ORCID:
    <https://orcid.org/0000-0001-8926-582X>),
  Dominik Rafacz [ctb],
  Krystyna Grzesiak [ctb]
Maintainer: Weronika Puchala <puchala.weronika@gmail.com>